Replace Gts_selection.py

Cell_behavior_initial_steps/Gts_selection.py

@@ -11,10 +11,10 @@ from bio2mslib.inout.inout import WriteData as WD
 import os
 
 #Selection of desire treated surface, Gts
-First_Pickle= True
+First_Pickle= False
 square_grid=False
 highs_grid=False
-diagonal=True
+diagonal=False
 
 if First_Pickle== True:
     #L is the matrix dimension
@@ -44,12 +44,10 @@ if First_Pickle== True:
                 if (i == j):
                     Gts[i,j]=0.5
 else:
-    with open('G_surface_empty.pkl', 'rb') as csv_file:
+    with open('Gts_Sample.cvs', 'rb') as csv_file:
         Gts = pickle.load(csv_file)
+#If complete surface SMAT wants to be open type 'Gts_Surface_T.cvs'
 
-with open('G_surface_empty.pkl', 'wb') as csv_file:
-    pickle.dump(Gts,csv_file)
-
-im = plt.imshow(Gts, cmap="copper_r")
+im = plt.imshow(Gts, cmap="bone")
 plt.show()