From cfa1df79eb8ee692d78762ff4ce5677a7b56bb05 Mon Sep 17 00:00:00 2001
From: encinass1u <jessica-maria.encinas-silvas4@etu.univ-lorraine.fr>
Date: Tue, 17 May 2022 16:02:08 +0000
Subject: [PATCH] Replace Gts_selection.py
---
Cell_behavior_initial_steps/Gts_selection.py | 12 +++++-------
1 file changed, 5 insertions(+), 7 deletions(-)
diff --git a/Cell_behavior_initial_steps/Gts_selection.py b/Cell_behavior_initial_steps/Gts_selection.py
index 66f82f4..00c55c9 100644
--- a/Cell_behavior_initial_steps/Gts_selection.py
+++ b/Cell_behavior_initial_steps/Gts_selection.py
@@ -11,10 +11,10 @@ from bio2mslib.inout.inout import WriteData as WD
import os
#Selection of desire treated surface, Gts
-First_Pickle= True
+First_Pickle= False
square_grid=False
highs_grid=False
-diagonal=True
+diagonal=False
if First_Pickle== True:
#L is the matrix dimension
@@ -44,12 +44,10 @@ if First_Pickle== True:
if (i == j):
Gts[i,j]=0.5
else:
- with open('G_surface_empty.pkl', 'rb') as csv_file:
+ with open('Gts_Sample.cvs', 'rb') as csv_file:
Gts = pickle.load(csv_file)
+#If complete surface SMAT wants to be open type 'Gts_Surface_T.cvs'
-with open('G_surface_empty.pkl', 'wb') as csv_file:
- pickle.dump(Gts,csv_file)
-
-im = plt.imshow(Gts, cmap="copper_r")
+im = plt.imshow(Gts, cmap="bone")
plt.show()
--
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